1DNM Dna date Jun 22, 1990
title Crystal Structure And Sequence-Dependent Conformation Of The Paired Oligonucleotide D(Cgcaagctggcg)
authors G.D.Webster, M.R.Sanderson, J.V.Skelly, S.Neidle, P.F.Swann, B.F. I.J.Tickle
compound source
Molecule: Dna (5'-D(Cpgpcpapapgpcptpgpgpcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.290 41.780 64.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceCrystal structure and sequence-dependent conformation of the A.G mispaired oligonucleotide d(CGCAAGCTGGCG)., Webster GD, Sanderson MR, Skelly JV, Neidle S, Swann PF, Li BF, Tickle IJ, Proc Natl Acad Sci U S A 1990 Sep;87(17):6693-7. PMID:2395870
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1dnm.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1DNM
  • Likely Quarternary Molecular Structure file(s) for 1DNM
  • Retrieve 1DNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DNM from S2C, [Save to disk]
    • View 1DNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DNM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DNM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dnm] [1dnm_B] [1dnm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DNM
  • Community annotation for 1DNM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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