1DO5 Chaperone date Dec 18, 1999
title Human Copper Chaperone For Superoxide Dismutase Domain II
authors A.L.Lamb, A.K.Wernimont, R.A.Pufahl, T.V.O'Halloran, A.C.Rosenzweig
compound source
Molecule: Human Copper Chaperone For Superoxide Dismutase Domain II;
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.186 66.716 88.033 90.00 96.63 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the second domain of the human copper chaperone for superoxide dismutase., Lamb AL, Wernimont AK, Pufahl RA, O'Halloran TV, Rosenzweig AC, Biochemistry 2000 Feb 22;39(7):1589-95. PMID:10677207
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1do5.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (1do5.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (1do5.pdb3.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 1DO5
  • CSU: Contacts of Structural Units for 1DO5
  • Likely Quarternary Molecular Structure file(s) for 1DO5
  • Retrieve 1DO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DO5 from S2C, [Save to disk]
    • View 1DO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DO5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DO5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1do5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1do5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1do5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1do5d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1do5] [1do5_A] [1do5_C] [1do5_B] [1do5_D]
  • SWISS-PROT database: [O14618]
  • Domain organization of [CCS_HUMAN] by SWISSPFAM
    • Other resources with information on 1DO5
  • Community annotation for 1DO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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