1DOK Chemoattractant date Nov 27, 1996
title Monocyte Chemoattractant Protein 1, P-Form
authors J.Lubkowski, G.Bujacz, L.Boque, A.Wlodawer, P.J.Domaille, T.M.Handel
compound source
Molecule: Monocyte Chemoattractant Protein 1
Chain: A, B
Synonym: Mcp-1, Mcaf
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Bl21
symmetry Space Group: P 43 21 2
R_factor 0.191 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.740 50.740 107.650 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand SO4 enzyme
related structures by homologous chain: 1ESR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of MCP-1 in two crystal forms provides a rare example of variable quaternary interactions., Lubkowski J, Bujacz G, Boque L, Domaille PJ, Handel TM, Wlodawer A, Nat Struct Biol 1997 Jan;4(1):64-9. PMID:8989326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1dok.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1dok.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 1DOK
  • CSU: Contacts of Structural Units for 1DOK
  • Likely Quarternary Molecular Structure file(s) for 1DOK
  • Retrieve 1DOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DOK from S2C, [Save to disk]
  • View 1DOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DOK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DOK, from MSDmotif at EBI
  • Genome occurence of 1DOK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1doka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dokb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1dok from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dok] [1dok_A] [1dok_B]
  • SWISS-PROT database: [P13500]
  • Domain organization of [CCL2_HUMAN] by SWISSPFAM
  • Domain found in 1DOK: [SCY ] by SMART
  • Alignments of the sequence of 1DOK with the sequences similar proteins can be viewed for 1DOK's classification [CCL2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CCL2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1DOK
  • Community annotation for 1DOK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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