1DOT Iron Transport Protein date Aug 03, 1995
title Crystallographic Structure Of Duck Ovotransferrin At 2.3 Ang Resolution
authors A.Rawas, H.Muirhead
compound source
Molecule: Duck Ovotransferrin
Chain: A
Synonym: Dot
 Organism_scientific: Anas Platyrhynchos
Organism_taxid: 8839
Cellular_location: Egg White
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.600 85.600 178.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand CO3, FE, FUC, NAG enzyme
related structures by homologous chain: 1OVB, 1OVT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of diferric duck ovotransferrin at 2.35 A resolution., Rawas A, Muirhead H, Williams J, Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):631-40. PMID:15299626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (1dot.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 1DOT
  • CSU: Contacts of Structural Units for 1DOT
  • Likely Quarternary Molecular Structure file(s) for 1DOT
  • Retrieve 1DOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DOT from S2C, [Save to disk]
    • View 1DOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DOT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DOT, from MSDmotif at EBI
  • Genome occurence of 1DOT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dot_1, region 1-334 [Jmol] [rasmolscript] [script source]
        - Domain d1dot_2, region 335-686 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dot] [1dot_A]
  • SWISS-PROT database: [P56410]
  • Domain organization of [TRFE_ANAPL] by SWISSPFAM
  • Domain found in 1DOT: [TR_FER ] by SMART
    • Other resources with information on 1DOT
  • Community annotation for 1DOT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science