1DPK Cell Adhesion date Dec 27, 1999
title Solution Structure Of The Cytoplasmic Domain Of The Integrin Subunit
authors O.Vinogradova, T.Haas, E.F.Plow, J.Qin
compound source
Molecule: Integrin Alpha-Iib Subunit
Chain: A
Fragment: Cytoplasmic Domain
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of Residues Is Naturally Found In The Platelets Of Homo Sap (Human).
methodSolution NMR
Primary referenceA structural basis for integrin activation by the cytoplasmic tail of the alpha IIb-subunit., Vinogradova O, Haas T, Plow EF, Qin J, Proc Natl Acad Sci U S A 2000 Feb 15;97(4):1450-5. PMID:10677482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1dpk.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1DPK
  • Retrieve 1DPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DPK from S2C, [Save to disk]
    • View 1DPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DPK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DPK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dpka_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dpk] [1dpk_A]
  • SWISS-PROT database: [P08514]
  • Domain organization of [ITA2B_HUMAN] by SWISSPFAM
    • Other resources with information on 1DPK
  • Community annotation for 1DPK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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