1DPT Cytokine date May 11, 1998
title D-Dopachrome Tautomerase
authors H.Sugimoto, M.Taniguchi, A.Nakagawa, I.Tanaka
compound source
Molecule: D-Dopachrome Tautomerase
Chain: A, B, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Lyss
Expression_system_plasmid: Pet3
symmetry Space Group: P 3
R_factor 0.164 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.230 84.230 40.960 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.54 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • positive regulation of tumor...

  • Primary referenceCrystal structure of human D-dopachrome tautomerase, a homologue of macrophage migration inhibitory factor, at 1.54 A resolution., Sugimoto H, Taniguchi M, Nakagawa A, Tanaka I, Suzuki M, Nishihira J, Biochemistry 1999 Mar 16;38(11):3268-79. PMID:10079069
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1dpt.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (1dpt.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (1dpt.pdb3.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1DPT
  • Likely Quarternary Molecular Structure file(s) for 1DPT
  • Structure Factors (346 Kb)
  • Retrieve 1DPT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DPT from S2C, [Save to disk]
  • Re-refined 1dpt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DPT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DPT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DPT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dpta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dptb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1dptc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dpt_C] [1dpt] [1dpt_B] [1dpt_A]
  • SWISS-PROT database: [P30046]
  • Domain organization of [DOPD_HUMAN] by SWISSPFAM
  • Other resources with information on 1DPT
  • Community annotation for 1DPT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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