1DPU Dna Binding Protein date Dec 27, 1999
title Solution Structure Of The C-Terminal Domain Of Human Rpa32 C With Ung2(73-88)
authors G.Mer, A.M.Edwards, W.J.Chazin
compound source
Molecule: Replication Protein A (Rpa32) C-Terminal Domain
Chain: A
Fragment: C-Terminal Domain (Residues 172-270)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Uracil Dna Glycosylase (Ung2)
Chain: B
Fragment: Residues 73-88
Engineered: Yes
Other_details: Chemically Synthesized

Synthetic: Yes
Other_details: This Peptide Sequence Is Found In The Nuclea [Ung2(73-88)] And Mitochondrial [Ung1(64-79)] Forms Of Huma Dna Glycosylase
methodSolution NMR
related structures by homologous chain: 1Z1D
Primary referenceStructural basis for the recognition of DNA repair proteins UNG2, XPA, and RAD52 by replication factor RPA., Mer G, Bochkarev A, Gupta R, Bochkareva E, Frappier L, Ingles CJ, Edwards AM, Chazin WJ, Cell 2000 Oct 27;103(3):449-56. PMID:11081631
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (673 Kb) [Save to disk]
  • Biological Unit Coordinates (1dpu.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1DPU
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1DPU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DPU from S2C, [Save to disk]
  • View 1DPU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DPU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DPU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dpua_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dpu_A] [1dpu] [1dpu_B]
  • SWISS-PROT database: [P15927] [P13051]
  • Domain organization of [RFA2_HUMAN] [UNG_HUMAN] by SWISSPFAM
  • Other resources with information on 1DPU
  • Community annotation for 1DPU at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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