1DQ0 Sugar Binding Protein date Dec 29, 1999
title Locked, Metal-Free Concanavalin A, A Minor Species In Soluti
authors J.Bouckaert, Y.Dewallef, F.Poortmans, L.Wyns, R.Loris
compound source
Molecule: Concanavalin-Br
Chain: A
Synonym: Con Br, Locked Metal-Free Concanavalin A
 Organism_scientific: Canavalia Ensiformis
Organism_common: Jack Bean
Organism_taxid: 3823
symmetry Space Group: I 2 2 2
R_factor 0.181 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.006 87.290 88.807 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
related structures by homologous chain: 1MVQ, 1OEB, 1SCS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural features of concanavalin A governing non-proline peptide isomerization., Bouckaert J, Dewallef Y, Poortmans F, Wyns L, Loris R, J Biol Chem 2000 Jun 30;275(26):19778-87. PMID:10748006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1dq0.pdb1.gz) 157 Kb
  • CSU: Contacts of Structural Units for 1DQ0
  • Likely Quarternary Molecular Structure file(s) for 1DQ0
  • Structure Factors (195 Kb)
  • Retrieve 1DQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DQ0 from S2C, [Save to disk]
  • Re-refined 1dq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DQ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DQ0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dq0a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dq0_A] [1dq0]
  • SWISS-PROT database: [P02866]
  • Domain organization of [CONA_CANEN] by SWISSPFAM
    • Other resources with information on 1DQ0
  • Community annotation for 1DQ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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