1DQD Immune System date Jan 04, 2000
title Crystal Structure Of Fab Hgr-2 F6, A Competitive Antagonist Of The Glucagon Receptor
authors L.M.Wright, A.M.Brzozowski, R.E.Hubbard, A.C.W.Pike, S.M.Roberts, R.N.Skovgaard, I.Svendsen, H.Vissing, R.P.Bywater
compound source
Molecule: Fab Hgr-2 F6
Chain: L
Fragment: Light Chain
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Using Rbf Mice, Monoclonal Antibodies Were Generated Against The Intact Human Membrane-Bound Glucagon Receptor. Fab Fragments Were Produced From The Intact Igg Monoclonal Antibody By Papain Digestion. Final Purification Of The Fab Fragments Was Performed Using Both A Monoq Ion Exchange Column And Subsequently A Monos Column.;

Molecule: Fab Hgr-2 F6
Chain: H
Fragment: Heavy Chain

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Using Rbf Mice, Monoclonal Antibodies Were Generated Against The Intact Human Membrane-Bound Glucagon Receptor. Fab Fragments Were Produced From The Intact Igg Monoclonal Antibody By Papain Digestion. Final Purification Of The Fab Fragments Was Performed Using Both A Monoq Ion Exchange Column And Subsequently A Monos Column.
symmetry Space Group: P 21 21 2
R_factor 0.217 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.140 133.740 37.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1L7T, 1MH5
Primary referenceStructure of Fab hGR-2 F6, a competitive antagonist of the glucagon receptor., Wright LM, Brzozowski AM, Hubbard RE, Pike AC, Roberts SM, Skovgaard RN, Svendsen I, Vissing H, Bywater RP, Acta Crystallogr D Biol Crystallogr 2000 May;56 ( Pt 5):573-80. PMID:10771426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1dqd.pdb1.gz) 76 Kb
  • CSU: Contacts of Structural Units for 1DQD
  • Likely Quarternary Molecular Structure file(s) for 1DQD
  • Structure Factors (350 Kb)
  • Retrieve 1DQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DQD from S2C, [Save to disk]
  • Re-refined 1dqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DQD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DQD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dqdh1, region H:1-122 [Jmol] [rasmolscript] [script source]
        - Domain d1dqdh2, region H:123-222 [Jmol] [rasmolscript] [script source]
        - Domain d1dqdl1, region L:1-106 [Jmol] [rasmolscript] [script source]
        - Domain d1dqdl2, region L:107-214 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dqd_L] [1dqd_H] [1dqd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1DQD: [IG_like] [IGv ] by SMART
  • Other resources with information on 1DQD
  • Community annotation for 1DQD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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