1DSW Oxidoreductase date Jan 10, 2000
title The Solution Structure Of A Monomeric, Reduced Form Of Human Copper, Zinc Superoxide Dismutase Bearing The Same Charge As The Native Protein
authors L.Banci, I.Bertini, R.Del Conte, R.Fadin, S.Mangani, M.S.Viezzoli
compound source
Molecule: Superoxide Dismutase (Cu-Zn)
Chain: A
Fragment: M4sod Is A Monomeric Variant Of Human Sod. The Mutant Is Studied In The Reduced Form, Each Molecule Contains A Cu(I) And A Zn(II) Ions.;
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Other_details: Copper, Zinc Superoxide Dismutase (Sod) Is An Enzyme Which Catalyzes The Dismutation Of Superoxide
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbr322
methodSolution NMR
ligand CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1KMG, 1RK7
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceThe solution structure of a monomeric, reduced form of human copper,zinc superoxide dismutase bearing the same charge as the native protein., Banci L, Bertini I, Del Conte R, Fadin R, Mangani S, Viezzoli MS, J Biol Inorg Chem 1999 Dec;4(6):795-803. PMID:10631612
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1DSW
  • CSU: Contacts of Structural Units for 1DSW
  • Retrieve 1DSW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DSW from S2C, [Save to disk]
  • View 1DSW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DSW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DSW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dswa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dsw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dsw_A] [1dsw]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 1DSW
  • Community annotation for 1DSW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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