1DUG	Transferase, Blood Clotting	date	Jan 17, 2000
title	Structure Of The Fibrinogen G Chain Integrin Binding And Fac Crosslinking Sites Obtained Through Carrier Protein Driven Crystallization
authors	S.Ware, J.P.Donahue, J.Hawiger, W.F.Anderson
compound		source
Molecule: Chimera Of Glutathione S-Transferase-Synthetic Li Terminal Fibrinogen Gamma Chain; Chain: A, B Ec: 2.5.1.18 Engineered: Yes Other_details: Glutathione S-Transferase (Residues 1-217) B Synthetic Sdp Linker (Residues 218-220) Bound To C-Terminal Fibrinogen Gamma Chain (Residues 221-234)		Organism_scientific: Schistosoma Japonicum, Homo Sapiens Organism_common: Human Organism_taxid: 6182, 9606 Gene: Fgg,Pro2061 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5alpha Other_details: Eukaryota; Metazoa; Platyhelminthes; Tremato Digenea; Strigeidida; Schistoso Matoidea; Schistosomatidae; Schistosoma
symmetry	Space Group: P 41 21 2	R_factor 0.185 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.780 105.780 137.230 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GSH	enzyme	Transferase E.C.2.5.1.18 BRENDA
related structures	by homologous chain: 1M9A
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the fibrinogen gamma-chain integrin binding and factor XIIIa cross-linking sites obtained through carrier protein driven crystallization., Ware S, Donahue JP, Hawiger J, Anderson WF, Protein Sci 1999 Dec;8(12):2663-71. PMID:10631982

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (1dug.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 1DUG CSU: Contacts of Structural Units for 1DUG Likely Quarternary Molecular Structure file(s) for 1DUG Structure Factors (528 Kb) Retrieve 1DUG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DUG from S2C, [Save to disk] Re-refined 1dug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DUG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DUG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DUG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1duga2, region A:1-80 [Jmol] [rasmolscript] [script source]     - Domain d1duga1, region A:81-220 [Jmol] [rasmolscript] [script source]     - Domain d1dugb2, region B:1-80 [Jmol] [rasmolscript] [script source]     - Domain d1dugb1, region B:81-220 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dug_A] [1dug_B] [1dug] SWISS-PROT database: [P02679] [P08515] Domain organization of [FIBG_HUMAN] [GST26_SCHJA] by SWISSPFAM

Other resources with information on 1DUG

Community annotation for 1DUG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1DUG from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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