1DUG Transferase, Blood Clotting date Jan 17, 2000
title Structure Of The Fibrinogen G Chain Integrin Binding And Factor Xiiia Crosslinking Sites Obtained Through Carrier Protein Driven Crystallization
authors S.Ware, J.P.Donahue, J.Hawiger, W.F.Anderson
compound source
Molecule: Chimera Of Glutathione S-Transferase-Synthetic Linker-C-Terminal Fibrinogen Gamma Chain;
Chain: A, B
Ec: 2.5.1.18
Engineered: Yes
Other_details: Glutathione S-Transferase (Residues 1-217) Bound To Synthetic Sdp Linker (Residues 218-220) Bound To C-Terminal Fibrinogen Gamma Chain (Residues 221-234)
Organism_scientific: Schistosoma Japonicum
Organism_taxid: 6182
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Other_details: Eukaryota; Metazoa; Platyhelminthes Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma
symmetry Space Group: P 41 21 2
R_factor 0.185 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.780 105.780 137.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GSH enzyme Transferase E.C.2.5.1.18 BRENDA
related structures by homologous chain: 1M9A
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the fibrinogen gamma-chain integrin binding and factor XIIIa cross-linking sites obtained through carrier protein driven crystallization., Ware S, Donahue JP, Hawiger J, Anderson WF, Protein Sci 1999 Dec;8(12):2663-71. PMID:10631982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1dug.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 1DUG
  • CSU: Contacts of Structural Units for 1DUG
  • Likely Quarternary Molecular Structure file(s) for 1DUG
  • Structure Factors (528 Kb)
  • Retrieve 1DUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DUG from S2C, [Save to disk]
  • Re-refined 1dug structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DUG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DUG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1duga2, region A:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1duga1, region A:81-220 [Jmol] [rasmolscript] [script source]
        - Domain d1dugb2, region B:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1dugb1, region B:81-220 [Jmol] [rasmolscript] [script source]
  • Fold representative 1dug from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dug_A] [1dug_B] [1dug]
  • SWISS-PROT database: [P02679] [P08515]
  • Domain organization of [FIBG_HUMAN] [GST26_SCHJA] by SWISSPFAM
  • Other resources with information on 1DUG
  • Community annotation for 1DUG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DUG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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