1DUM Antimicrobial Protein date Jan 18, 2000
title Nmr Structure Of [F5y, F16w] Magainin 2 Bound To Phospholipi
authors A.Takeda, K.Wakamatsu, T.Tachi, K.Matsuzaki
compound source
Molecule: Magainin 2
Chain: A, B
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: The Peptide Was Prepared By Solid-Phase Synt The Sequence Of This Peptide Naturally Occurs In Xenopus La (African Clawed Frog)
methodSolution NMR
Primary referenceEffects of peptide dimerization on pore formation: Antiparallel disulfide-dimerized magainin 2 analogue., Hara T, Kodama H, Kondo M, Wakamatsu K, Takeda A, Tachi T, Matsuzaki K, Biopolymers 2001 Apr 5;58(4):437-46. PMID:11180056
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1dum.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1DUM
  • Original NMR restraints for 1DUM from PDB
  • Retrieve 1DUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DUM from S2C, [Save to disk]
  • View 1DUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DUM
  • VIPERdb: visual, structural and computational analysis of 1DUM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DUM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1duma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dumb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dum_B] [1dum] [1dum_A]
  • SWISS-PROT database: [P11006]
  • Belongs to the magainin (magainin) family according to TCDB.
  • Domain organization of [MAGA_XENLA] by SWISSPFAM
  • Other resources with information on 1DUM
  • Community annotation for 1DUM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science