1DUX Transcription Dna date Jan 19, 2000
title Elk-1dna Structure Reveals How Residues Distal From Dna- Binding Surface Affect Dna-Recognition
authors Y.Mo, B.Vaessen, K.Johnston, R.Marmorstein
compound source
Molecule: Dna (5'- D(Tpgpapcpcpgpgpapapgptpgpt)-3');
Chain: A, D
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Apcpapcptptpcpcpgpgptpcpa)-3');
Chain: B, E
Engineered: Yes

Synthetic: Yes

Molecule: Ets-Domain Protein Elk-1
Chain: C, F
Fragment: Residues 1-94
Synonym: Transforming Protein Elk-1, Elk1, Member Of Ets Oncogene Family;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prseta
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.245 140.523 38.620 90.00 115.52 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1AWC, 1BC7
Gene
Ontology
ChainFunctionProcessComponent
F, C


Primary referenceStructure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA., Mo Y, Vaessen B, Johnston K, Marmorstein R, Nat Struct Biol 2000 Apr;7(4):292-7. PMID:10742173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1dux.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 1DUX
  • Likely Quarternary Molecular Structure file(s) for 1DUX
  • Retrieve 1DUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DUX from S2C, [Save to disk]
  • View 1DUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DUX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DUX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1duxc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1duxf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1dux from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dux_B] [1dux_F] [1dux_E] [1dux_D] [1dux_C] [1dux_A] [1dux]
  • SWISS-PROT database: [P19419]
  • Domain organization of [ELK1_HUMAN] by SWISSPFAM
  • Domain found in 1DUX: [ETS ] by SMART
  • Other resources with information on 1DUX
  • Community annotation for 1DUX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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