1DUY CRYSTAL STRUCTURE OF HLA-A*0201/OCTAMERIC TAX PEPTIDE COMPLEX date
authors Khan, A.R., Baker, B.M., Ghosh, P., Biddison, W.E., Wiley, D.C.
compound source
symmetry
R_factor
R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
related structures by homologous chain: 1LEK, 1W72
Gene
Ontology
ChainFunctionProcessComponent
E, B


Primary referenceThe structure and stability of an HLA-A*0201/octameric tax peptide complex with an empty conserved peptide-N-terminal binding site., Khan AR, Baker BM, Ghosh P, Biddison WE, Wiley DC, J Immunol 2000 Jun 15;164(12):6398-405. PMID:10843695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (1duy.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (1duy.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 1DUY
  • Likely Quarternary Molecular Structure file(s) for 1DUY
  • Structure Factors (354 Kb)
  • Retrieve 1DUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DUY from S2C, [Save to disk]
  • Re-refined 1duy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DUY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DUY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1duya2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1duya1, region A:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1duyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1duyd2, region D:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1duyd1, region D:182-275 [Jmol] [rasmolscript] [script source]
        - Domain d1duye_, region E [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1duy] [1duy_E] [1duy_D] [1duy_A] [1duy_B] [1duy_C] [1duy_F]
  • SWISS-PROT database: [P01892] [P61769]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 1DUY: [IGc1 ] by SMART
  • Other resources with information on 1DUY
  • Community annotation for 1DUY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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