1DVN Blood Clotting date Jan 21, 2000
title Latent Form Of Plasminogen Activator Inhibitor-1 (Pai-1)
authors T.J.Stout, H.Graham, D.I.Buckley, D.J.Matthews
compound source
Molecule: Plasminogen Activator Inhibitor-1
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Umbilical Vein Endothelium Library
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchis2a
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.289
length a length b length c angle alpha angle beta angle gamma
154.581 46.697 61.966 90.00 107.11 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1A7C, 1OC0
  • negative regulation of endop...
  • negative regulation of smoot...

  • Primary referenceStructures of active and latent PAI-1: a possible stabilizing role for chloride ions., Stout TJ, Graham H, Buckley DI, Matthews DJ, Biochemistry 2000 Jul 25;39(29):8460-9. PMID:10913251
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1dvn.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 1DVN
  • Likely Quarternary Molecular Structure file(s) for 1DVN
  • Structure Factors (212 Kb)
  • Retrieve 1DVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DVN from S2C, [Save to disk]
  • Re-refined 1dvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DVN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DVN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dvna_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1dvn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dvn] [1dvn_A]
  • SWISS-PROT database: [P05121]
  • Domain organization of [PAI1_HUMAN] by SWISSPFAM
  • Domain found in 1DVN: [SERPIN ] by SMART
  • Other resources with information on 1DVN
  • Community annotation for 1DVN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DVN from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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