1DVP	Transferase	date	Jan 21, 2000
title	Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, Involved In Membrane Trafficking And Signal Transduction
authors	Y.Mao, A.Nickitenko, X.Duan, T.E.Lloyd, M.N.Wu, H.Bellen, F.A.Quio
compound		source
Molecule: Hepatocyte Growth Factor-Regulated Tyrosine Kinas Substrate; Chain: A Fragment: N-Terminal Vhs And Fyve Tandem Domains Synonym: Hrs Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Ptyb1
symmetry	Space Group: C 1 2 1	R_factor 0.215 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.706 69.665 41.799 90.00 94.77 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CIT, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the VHS and FYVE tandem domains of Hrs, a protein involved in membrane trafficking and signal transduction., Mao Y, Nickitenko A, Duan X, Lloyd TE, Wu MN, Bellen H, Quiocho FA, Cell 2000 Feb 18;100(4):447-56. PMID:10693761

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (1dvp.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 1DVP CSU: Contacts of Structural Units for 1DVP Likely Quarternary Molecular Structure file(s) for 1DVP Structure Factors (183 Kb) Retrieve 1DVP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DVP from S2C, [Save to disk] Re-refined 1dvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DVP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DVP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DVP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dvpa1, region A:1-145 [Jmol] [rasmolscript] [script source]     - Domain d1dvpa2, region A:149-220 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dvp_A] [1dvp] SWISS-PROT database: [Q960X8] Domain organization of [HRS_DROME] by SWISSPFAM Domains found in 1DVP: [FYVE] [VHS ] by SMART

Other resources with information on 1DVP

Community annotation for 1DVP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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