1DVQ Hormone Growth Factor date Jan 22, 2000
title Crystal Structure Of Human Transthyretin
authors T.Klabunde, H.M.Petrassi, V.B.Oza, J.W.Kelly, J.C.Sacchettini
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.203 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.850 85.800 64.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1III, 2TRY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRational design of potent human transthyretin amyloid disease inhibitors., Klabunde T, Petrassi HM, Oza VB, Raman P, Kelly JW, Sacchettini JC, Nat Struct Biol 2000 Apr;7(4):312-21. PMID:10742177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1dvq.pdb1.gz) 74 Kb
  • CSU: Contacts of Structural Units for 1DVQ
  • Likely Quarternary Molecular Structure file(s) for 1DVQ
  • Retrieve 1DVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DVQ from S2C, [Save to disk]
  • View 1DVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DVQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DVQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dvqa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dvqb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1dvq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dvq_A] [1dvq_B] [1dvq]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 1DVQ: [TR_THY ] by SMART
  • Other resources with information on 1DVQ
  • Community annotation for 1DVQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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