1DZ1 Chromatin Structure date Feb 11, 2000
title Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain
authors S.V.Brasher, B.O.Smith, R.H.Fogh, D.Nietlispach, A.Thiru, P.R.Nie R.W.Broadhurst, L.J.Ball, N.Murzina, E.D.Laue
compound source
Molecule: Modifier 1 Protein
Chain: A, B
Fragment: Shadow Chromo Domain, Residues 104-171
Synonym: M31, Hp1 Beta, Momod1, Heterochromatin Protein 1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
methodSolution NMR
related structures by homologous chain: 1S4Z
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of mouse HP1 suggests a unique mode of single peptide recognition by the shadow chromo domain dimer., Brasher SV, Smith BO, Fogh RH, Nietlispach D, Thiru A, Nielsen PR, Broadhurst RW, Ball LJ, Murzina NV, Laue ED, EMBO J 2000 Apr 3;19(7):1587-97. PMID:10747027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (602 Kb) [Save to disk]
  • Biological Unit Coordinates (1dz1.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 1DZ1
  • Retrieve 1DZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DZ1 from S2C, [Save to disk]
  • View 1DZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DZ1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DZ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dz1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dz1b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dz1_B] [1dz1_A] [1dz1]
  • SWISS-PROT database: [P83917]
  • Domain organization of [CBX1_MOUSE] by SWISSPFAM
  • Domains found in 1DZ1: [CHROMO] [ChSh ] by SMART
  • Other resources with information on 1DZ1
  • Community annotation for 1DZ1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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