1E07 Glycoprotein date Mar 11, 2000
title Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data
authors M.K.Boehm, S.J.Perkins
compound source
Molecule: Carcinoembryonic Antigen
Chain: A
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Solution Scatteringresolution
Primary referenceStructural models for carcinoembryonic antigen and its complex with the single-chain Fv antibody molecule MFE23., Boehm MK, Perkins SJ, FEBS Lett 2000 Jun 9;475(1):11-6. PMID:10854848
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (1e07.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1E07
  • Retrieve 1E07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E07 from S2C, [Save to disk]
    • View 1E07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 1E07
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  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E07, from MSDmotif at EBI
  • Fold representative 1e07 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e07_A]
  • SWISS-PROT database: [P06731]
  • Domain organization of [CEAM5_HUMAN] by SWISSPFAM
  • Domains found in 1E07: [IG_like] [IGc2 ] by SMART
  • Alignments of the sequence of 1E07 with the sequences similar proteins can be viewed for 1E07's classification [CEAM5_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CEAM5_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1E07
  • Community annotation for 1E07 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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