1E41 Apoptosis date Jun 27, 2000
title Death Domain From Human Faddmort1
authors P.C.Driscoll, H.Berglund, D.Olerenshaw, N.Q.Mcdonald
compound source
Molecule: Fadd Protein
Chain: A
Fragment: Death Domain Residues 93-192
Synonym: Fas-Associating Death Domain-Containing Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: T7
Expression_system_plasmid: Pet14b
Other_details: Pcr Cloning Into N-Terminal 6his Tag Thrombin-Cleavable Fusion Protein
methodSolution NMR
related structures by homologous chain: 1E3Y, 1FAD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe three-dimensional solution structure and dynamic properties of the human FADD death domain., Berglund H, Olerenshaw D, Sankar A, Federwisch M, McDonald NQ, Driscoll PC, J Mol Biol 2000 Sep 8;302(1):171-88. PMID:10964568
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (675 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1E41
  • Original NMR restraints for 1E41 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1E41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E41 from S2C, [Save to disk]
  • View 1E41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E41
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E41, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e41a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e41] [1e41_A]
  • SWISS-PROT database: [Q13158]
  • Domain organization of [FADD_HUMAN] by SWISSPFAM
  • Domain found in 1E41: [DEATH ] by SMART
  • Other resources with information on 1E41
  • Community annotation for 1E41 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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