1E4J Immune System date Jul 07, 2000
title Crystal Structure Of The Soluble Human Fc-Gamma Receptor III
authors P.Sondermann, R.Huber, U.Jacob
compound source
Molecule: Low Affinity Immunoglobulin Gamma Fc Receptor III
Chain: A
Fragment: Extracellular Domain
Synonym: Cd16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Leukocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Inclusion Bodies
Expression_system_plasmid: Pet21
symmetry Space Group: P 2 21 21
R_factor 0.195 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.700 60.290 85.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1N26, 1T83
Primary referenceThe 3.2-A crystal structure of the human IgG1 Fc fragment-Fc gammaRIII complex., Sondermann P, Huber R, Oosthuizen V, Jacob U, Nature 2000 Jul 20;406(6793):267-73. PMID:10917521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1e4j.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1E4J
  • Likely Quarternary Molecular Structure file(s) for 1E4J
  • Retrieve 1E4J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4J from S2C, [Save to disk]
  • View 1E4J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E4J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ja1, region A:2-86 [Jmol] [rasmolscript] [script source]
        - Domain d1e4ja2, region A:87-172 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4j] [1e4j_A]
  • SWISS-PROT database: [O75015]
  • Domain organization of [FCG3B_HUMAN] by SWISSPFAM
  • Domain found in 1E4J: [IG ] by SMART
  • Other resources with information on 1E4J
  • Community annotation for 1E4J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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