1E4Q Defensin date Jul 12, 2000
title Solution Structure Of The Human Defensin Hbd-2
authors F.Bauer, K.Schweimer, E.Kluver, K.Adermann, W.G.Forssmann, P.Roesch, H.Sticht
compound source
Molecule: Beta-Defensin 2
Chain: A
Fragment: Residues 28-64 Of The Beta-Defensin 2 Precursor
Synonym: Hbd-2
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Skin
Cellular_location: Extracellular
methodSolution NMR
related structures by homologous chain: 1FQQ
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemoattractant activity


  • Primary referenceStructure determination of human and murine beta-defensins reveals structural conservation in the absence of significant sequence similarity., Bauer F, Schweimer K, Kluver E, Conejo-Garcia JR, Forssmann WG, Rosch P, Adermann K, Sticht H, Protein Sci 2001 Dec;10(12):2470-9. PMID:11714914
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1E4Q
  • Retrieve 1E4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4Q from S2C, [Save to disk]
  • View 1E4Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E4Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E4Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4qa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1e4q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4q_A] [1e4q]
  • SWISS-PROT database: [O15263]
  • Belongs to the pore-forming -defensin (-defensin) family according to TCDB.
  • Domain organization of [DEFB2_HUMAN] by SWISSPFAM
  • Domain found in 1E4Q: [DEFSN ] by SMART
  • Other resources with information on 1E4Q
  • Community annotation for 1E4Q at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1E4Q from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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