1E69 Chromosome Segregation date Aug 09, 2000
title Smc Head Domain From Thermotoga Maritima
authors J.Lowe, S.C.Cordell, F.Van Den Ent
compound source
Molecule: Chromosome Segregation Smc Protein
Chain: A, B, C, D, E, F
Fragment: Smc Fusion Of The N- And C-Terminal Globular Doma Residues 1-152 And 1023-1164;
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Atcc: Dsm3109
Cellular_location: Cytosol
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_cellular_location: Cytosol
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis17
symmetry Space Group: P 1 21 1
R_factor 0.250 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.000 49.190 233.880 90.00 94.63 90.00
method X-Ray Diffractionresolution 3.10 Å
Primary referenceCrystal structure of the SMC head domain: an ABC ATPase with 900 residues antiparallel coiled-coil inserted., Lowe J, Cordell SC, van den Ent F, J Mol Biol 2001 Feb 9;306(1):25-35. PMID:11178891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (1e69.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1e69.pdb2.gz) 45 Kb
  • Biological Unit Coordinates (1e69.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (1e69.pdb4.gz) 45 Kb
  • Biological Unit Coordinates (1e69.pdb5.gz) 45 Kb
  • Biological Unit Coordinates (1e69.pdb6.gz) 45 Kb
  • CSU: Contacts of Structural Units for 1E69
  • Likely Quarternary Molecular Structure file(s) for 1E69
  • Structure Factors (373 Kb)
  • Retrieve 1E69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E69 from S2C, [Save to disk]
  • Re-refined 1e69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E69
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E69, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e69a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e69b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1e69c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1e69d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1e69e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1e69f_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e69_D] [1e69_C] [1e69] [1e69_F] [1e69_A] [1e69_B] [1e69_E]
  • SWISS-PROT database: [Q9X0R4]
  • Domain organization of [Q9X0R4_THEMA] by SWISSPFAM
  • Domain found in 1E69: [AAA ] by SMART
  • Other resources with information on 1E69
  • Community annotation for 1E69 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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