1E7F Plasma Protein date Aug 29, 2000
title Human Serum Albumin Complexed With Dodecanoic Acid (Lauric Acid)
authors A.A.Bhattacharya, T.Gruene, S.Curry
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Serum
Gene: Alb
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
symmetry Space Group: C 1 2 1
R_factor 0.225 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.500 38.900 95.770 90.00 104.63 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand DAO enzyme
related structures by homologous chain: 1E7H, 1HA2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystallographic analysis reveals common modes of binding of medium and long-chain fatty acids to human serum albumin., Bhattacharya AA, Grune T, Curry S, J Mol Biol 2000 Nov 10;303(5):721-32. PMID:11061971
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1e7f.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1E7F
  • CSU: Contacts of Structural Units for 1E7F
  • Likely Quarternary Molecular Structure file(s) for 1E7F
  • Structure Factors (175 Kb)
  • Retrieve 1E7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E7F from S2C, [Save to disk]
  • Re-refined 1e7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E7F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E7F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e7fa2, region A:197-388 [Jmol] [rasmolscript] [script source]
        - Domain d1e7fa1, region A:3-196 [Jmol] [rasmolscript] [script source]
        - Domain d1e7fa3, region A:389-584 [Jmol] [rasmolscript] [script source]
  • Fold representative 1e7f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e7f_A] [1e7f]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 1E7F: [ALBUMIN ] by SMART
  • Other resources with information on 1E7F
  • Community annotation for 1E7F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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