1E8J Electron Transport date Sep 21, 2000
title Solution Structure Of Desulfovibrio Gigas Zinc Rubredoxin, N Structures
authors P.Lamosa, L.Brennan, H.Vis, D.L.Turner, H.Santos
compound source
Molecule: Rubredoxin
Chain: A
Engineered: Yes
Other_details: Iron-Sulfur-Protein, Zinc Substituted
Organism_scientific: Desulfovibrio Gigas
Organism_taxid: 879
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Prppl1
Expression_system_gene: Rddg
methodSolution NMR
related structures by homologous chain: 1BFY, 1SPW, 1ZRP
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceNMR structure of Desulfovibrio gigas rubredoxin: a model for studying protein stabilization by compatible solutes., Lamosa P, Brennan L, Vis H, Turner DL, Santos H, Extremophiles 2001 Oct;5(5):303-11. PMID:11699644
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8j.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1E8J
  • Original NMR restraints for 1E8J from PDB
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  • SEQRES to COORDINATES correlation for 1E8J from S2C, [Save to disk]
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 1E8J
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8j] [1e8j_A]
  • SWISS-PROT database: [P00270]
  • Domain organization of [RUBR_DESGI] by SWISSPFAM
  • Other resources with information on 1E8J
  • Community annotation for 1E8J at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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