1E8K Isomerase date Sep 25, 2000
title Cyclophilin 3 Complexed With Dipeptide Ala-Pro
authors S.Y.Wu, J.Dornan, G.Kontopidis, P.Taylor, M.D.Walkinshaw
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase 3
Chain: A
Synonym: Ppiase 3, Cyclophilin-3, Rotamase 3
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-5a
symmetry Space Group: P 41 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.035 61.035 122.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ALA, PRO enzyme Isomerase E.C.5.2.1.8 BRENDA
related structures by homologous chain: 1IIP, 1M9D, 3CYH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe First Direct Determination of a Ligand Binding Constant in Protein Crystals., Wu Sy S, Dornan J, Kontopidis G, Taylor P, Walkinshaw MD, Angew Chem Int Ed Engl. 2001 Feb 2;40(3):582-586. PMID:11180378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8k.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1E8K
  • CSU: Contacts of Structural Units for 1E8K
  • Likely Quarternary Molecular Structure file(s) for 1E8K
  • Retrieve 1E8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8K from S2C, [Save to disk]
  • View 1E8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E8K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8ka_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8k] [1e8k_A]
  • SWISS-PROT database: [P52011]
  • Domain organization of [CYP3_CAEEL] by SWISSPFAM
  • Other resources with information on 1E8K
  • Community annotation for 1E8K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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