1E8Y Structure determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin and staurosporine date
authors Walker, E.H., Pacold, M.E., Perisic, O., Stephens, L., Hawkins, P.T., Wymann, M.P., Williams, R.L.
compound source
symmetry
R_factor
R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
related structures by homologous chain: 1E7U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin, and staurosporine., Walker EH, Pacold ME, Perisic O, Stephens L, Hawkins PT, Wymann MP, Williams RL, Mol Cell 2000 Oct;6(4):909-19. PMID:11090628
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8y.pdb1.gz) 141 Kb
  • CSU: Contacts of Structural Units for 1E8Y
  • Likely Quarternary Molecular Structure file(s) for 1E8Y
  • Structure Factors (450 Kb)
  • Retrieve 1E8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8Y from S2C, [Save to disk]
  • Re-refined 1e8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1E8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E8Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E8Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8ya3, region A:143-322 [Jmol] [rasmolscript] [script source]
        - Domain d1e8ya2, region A:357-522 [Jmol] [rasmolscript] [script source]
        - Domain d1e8ya1, region A:525-725 [Jmol] [rasmolscript] [script source]
        - Domain d1e8ya4, region A:726-1092 [Jmol] [rasmolscript] [script source]
  • Fold representative 1e8y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8y_A] [1e8y]
  • SWISS-PROT database: [P48736]
  • Domain organization of [PK3CG_HUMAN] by SWISSPFAM
  • Domains found in 1E8Y: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
    • Other resources with information on 1E8Y
  • Community annotation for 1E8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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