1E9F Transferase date Oct 11, 2000
title Mutant Human Thymidylate Kinase Complexed With Tmp And Adp
authors N.Ostermann, A.Lavie, S.Padiyar, R.Brundiers, T.Veit, J.Reinstein R.S.Goody, M.Konrad, I.Schlichting
compound source
Molecule: Thymidylate Kinase
Chain: A
Synonym: Dtmp Kinase
Ec: 2.7.4.9
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_taxid: 9606, 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.226 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.200 100.200 49.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ADP, MG, TMP enzyme Transferase E.C.2.7.4.9 BRENDA
related structures by homologous chain: 1E2E, 1E98
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePotentiating AZT activation: structures of wild-type and mutant human thymidylate kinase suggest reasons for the mutants' improved kinetics with the HIV prodrug metabolite AZTMP., Ostermann N, Lavie A, Padiyar S, Brundiers R, Veit T, Reinstein J, Goody RS, Konrad M, Schlichting I, J Mol Biol. 2000 Nov 17;304(1):43-53. PMID:11071809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1e9f.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1E9F
  • CSU: Contacts of Structural Units for 1E9F
  • Likely Quarternary Molecular Structure file(s) for 1E9F
  • Retrieve 1E9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E9F from S2C, [Save to disk]
  • View 1E9F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E9F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E9F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e9fa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e9f] [1e9f_A]
  • SWISS-PROT database: [P23919]
  • Domain organization of [KTHY_HUMAN] by SWISSPFAM
  • Other resources with information on 1E9F
  • Community annotation for 1E9F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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