1E9M Iron-Sulfur Protein date Oct 24, 2000
title Ferredoxin Vi From Rhodobacter Capsulatus
authors G.Sainz, J.Armengaud, V.Stojanoff, N.Sanishvili, Y.Jouanneau, S.L
compound source
Molecule: Ferredoxin Vi
Chain: A
Engineered: Yes
Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Strain: B10
Gene: Fdxe
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Paj66
Expression_system_gene: Fdxe
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.214
length a length b length c angle alpha angle beta angle gamma
45.340 49.030 54.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand FES enzyme
  • electron transfer activity

  • Primary referenceCrystallization and preliminary X-ray diffraction analysis of a [2Fe-2S] ferredoxin (FdVI) from Rhodobacter capsulatus., Armengaud J, Sainz G, Jouanneau Y, Sieker LC, Acta Crystallogr D Biol Crystallogr 2001 Feb;57(Pt 2):301-3. PMID:11173487
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1e9m.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1E9M
  • CSU: Contacts of Structural Units for 1E9M
  • Likely Quarternary Molecular Structure file(s) for 1E9M
  • Retrieve 1E9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E9M from S2C, [Save to disk]
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  • 3D motif for 1E9M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e9ma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1e9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e9m_A] [1e9m]
  • SWISS-PROT database: [P80306]
  • Domain organization of [FER6_RHOCA] by SWISSPFAM
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