1E9T Cell Motility Factor date Oct 26, 2000
title High Resolution Solution Structure Of Human Intestinal Trefo
authors X.Lemercinier, F.Muskett, B.Cheeseman, P.Mcintosh, M.Carr
compound source
Molecule: Intestinal Trefoil Factor
Chain: A
Synonym: Hitf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932
Expression_system_strain: Mt-663
Expression_system_plasmid: Phw 1066
Other_details: Recombinant Hitf Produced In A Yeast Express Vector.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution solution structure of human intestinal trefoil factor and functional insights from detailed structural comparisons with the other members of the trefoil family of mammalian cell motility factors., Lemercinier X, Muskett FW, Cheeseman B, McIntosh PB, Thim L, Carr MD, Biochemistry 2001 Aug 14;40(32):9552-9. PMID:11583154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1242 Kb) [Save to disk]
  • Biological Unit Coordinates (1e9t.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1E9T
  • Original NMR restraints for 1E9T from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1E9T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E9T from S2C, [Save to disk]
  • View 1E9T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E9T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E9T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e9ta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1e9t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e9t_A] [1e9t]
  • SWISS-PROT database: [Q07654]
  • Domain organization of [TFF3_HUMAN] by SWISSPFAM
  • Domain found in 1E9T: [PD ] by SMART
  • Other resources with information on 1E9T
  • Community annotation for 1E9T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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