1EE4 Transport Protein date Jan 30, 2000
title Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide
authors E.Conti
compound source
Molecule: Karyopherin Alpha
Chain: A, B
Fragment: Armadillo Domain
Synonym: Serine-Rich Rna Polymerase I Suppressor Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Myc Proto-Oncogene Protein
Chain: C, D, E, F
Fragment: Nls (Nuclear Localization Signal) At The Larger (Functional) Binding Site;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
42.680 85.850 117.500 90.00 93.42 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1BK5, 1WA5
Primary referenceCrystallographic analysis of the specific yet versatile recognition of distinct nuclear localization signals by karyopherin alpha., Conti E, Kuriyan J, Structure Fold Des 2000 Mar 15;8(3):329-38. PMID:10745017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1ee4.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (1ee4.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1EE4
  • Likely Quarternary Molecular Structure file(s) for 1EE4
  • Retrieve 1EE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EE4 from S2C, [Save to disk]
  • View 1EE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EE4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EE4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ee4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ee4b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ee4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ee4_F] [1ee4_B] [1ee4_E] [1ee4_A] [1ee4] [1ee4_C] [1ee4_D]
  • SWISS-PROT database: [Q02821] [P01106]
  • Domain organization of [IMA1_YEAST] [MYC_HUMAN] by SWISSPFAM
  • Domain found in 1EE4: [ARM ] by SMART
  • Other resources with information on 1EE4
  • Community annotation for 1EE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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