1EE5 Transport Protein date Jan 30, 2000
title Yeast Karyopherin (Importin) Alpha In A Complex With A Nucle Nls Peptide
authors E.Conti
compound source
Molecule: Karyopherin Alpha
Chain: A
Fragment: Armadilllo-Repeat Domain
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Nucleoplasmin
Chain: B
Fragment: Nls (Nuclear Localization Sequence)
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.560 63.700 62.150 90.00 97.34 90.00
method X-Ray Diffractionresolution 2.40 Å
note 1EE5 (Molecule of the Month:pdb85)
related structures by homologous chain: 1BK5, 1UN0
Primary referenceCrystallographic analysis of the specific yet versatile recognition of distinct nuclear localization signals by karyopherin alpha., Conti E, Kuriyan J, Structure Fold Des 2000 Mar 15;8(3):329-38. PMID:10745017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1ee5.pdb1.gz) 66 Kb
  • CSU: Contacts of Structural Units for 1EE5
  • Likely Quarternary Molecular Structure file(s) for 1EE5
  • Retrieve 1EE5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EE5 from S2C, [Save to disk]
    • View 1EE5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EE5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EE5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ee5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ee5] [1ee5_B] [1ee5_A]
  • SWISS-PROT database: [Q02821] [P05221]
  • Domain organization of [IMA1_YEAST] [NUPL_XENLA] by SWISSPFAM
  • Domain found in 1EE5: [ARM ] by SMART
    • Other resources with information on 1EE5
  • Community annotation for 1EE5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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