1EEU Immune System date Feb 03, 2000
title M4ly(27d)Dq89dt94h Mutant Of Len
authors P.R.Pokkuluri, X.Cai, M.Gu, F.J.Stevens, M.Schiffer
compound source
Molecule: Kappa-4 Immunoglobulin (Light Chain)
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pask40
symmetry Space Group: P 21 21 2
R_factor 0.194 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.900 104.800 42.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand IPA enzyme
related structures by homologous chain: 1NLB
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFactors contributing to decreased protein stability when aspartic acid residues are in beta-sheet regions., Pokkuluri PR, Gu M, Cai X, Raffen R, Stevens FJ, Schiffer M, Protein Sci 2002 Jul;11(7):1687-94. PMID:12070321
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1eeu.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1EEU
  • CSU: Contacts of Structural Units for 1EEU
  • Likely Quarternary Molecular Structure file(s) for 1EEU
  • Structure Factors (558 Kb)
  • Retrieve 1EEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EEU from S2C, [Save to disk]
  • Re-refined 1eeu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EEU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EEU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eeua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1eeub_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eeu_B] [1eeu_A] [1eeu]
  • SWISS-PROT database: [P01625]
  • Domain organization of [KV402_HUMAN] by SWISSPFAM
  • Domain found in 1EEU: [IGv ] by SMART
  • Other resources with information on 1EEU
  • Community annotation for 1EEU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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