1EHL Immune System date Feb 21, 2000
title 64m-2 Antibody Fab Complexed With D(5ht)(6-4)T
authors H.Yokoyama, R.Mizutani, Y.Satow, Y.Komatsu, E.Ohtsuka, O.Nikaido
compound source
Molecule: 5'-(D(5ht)P(6-4)T)-3'
Chain: A
Engineered: Yes
Other_details: Complex Involves A C6-C4 Bond Between 5ht(1) And T(2), A Photoproduct Ligand;
Synthetic: Yes
Other_details: Purified From Ultraviolet-Radiated Dtpt

Molecule: Anti-(6-4) Photoproduct Antibody 64m-2 Fab (Light Chain);
Chain: L

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell_line: Hybridoma

Molecule: Anti-(6-4) Photoproduct Antibody 64m-2 Fab (Heavy Chain);
Chain: H

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell_line: Hybridoma
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.500 48.062 77.939 90.00 104.69 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 5HT enzyme
related structures by homologous chain: 1C5D, 1MRC, 1NGQ
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceCrystal structure of the 64M-2 antibody Fab fragment in complex with a DNA dT(6-4)T photoproduct formed by ultraviolet radiation., Yokoyama H, Mizutani R, Satow Y, Komatsu Y, Ohtsuka E, Nikaido O, J Mol Biol 2000 Jun 9;299(3):711-23. PMID:10835279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1ehl.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1EHL
  • CSU: Contacts of Structural Units for 1EHL
  • Likely Quarternary Molecular Structure file(s) for 1EHL
  • Structure Factors (129 Kb)
  • Retrieve 1EHL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EHL from S2C, [Save to disk]
  • Re-refined 1ehl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EHL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EHL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EHL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ehlh1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1ehlh2, region H:114-227 [Jmol] [rasmolscript] [script source]
        - Domain d1ehll1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1ehll2, region L:108-213 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ehl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ehl_H] [1ehl_A] [1ehl_L] [1ehl]
  • SWISS-PROT database: [P01863]
  • Domain organization of [GCAA_MOUSE] by SWISSPFAM
  • Domains found in 1EHL: [IG_like] [IGv ] by SMART
  • Other resources with information on 1EHL
  • Community annotation for 1EHL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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