1EIK Transferase date Feb 25, 2000
title Solution Structure Of Rna Polymerase Subunit Rpb5 From Methanobacterium Thermoautotrophicum
authors A.Yee, V.Booth, A.Dharamsi, A.Engel, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Consortium (Nesg)
compound source
Molecule: Rna Polymerase Subunit Rpb5
Chain: A
Ec: 2.7.7.6
Engineered: Yes
Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum., Yee A, Booth V, Dharamsi A, Engel A, Edwards AM, Arrowsmith CH, Proc Natl Acad Sci U S A 2000 Jun 6;97(12):6311-5. PMID:10841538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (1eik.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1EIK
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1EIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EIK from S2C, [Save to disk]
  • View 1EIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EIK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eika_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eik_A] [1eik]
  • SWISS-PROT database: [O27122]
  • Domain organization of [RPOH_METTH] by SWISSPFAM
  • Other resources with information on 1EIK
  • Community annotation for 1EIK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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