1EJ7	Lyase	date	Mar 01, 2000
title	Crystal Structure Of Unactivated Tobacco Rubisco With Bound Ions
authors	A.P.Duff, T.J.Andrews, P.M.G.Curmi
compound		source
Molecule: Rubisco (Large Subunit) Chain: L Ec: 4.1.1.39		Organism_scientific: Nicotiana Tabacum Organism_common: Common Tobacco Organism_taxid: 4097 Variant: Wisconsin-38 Organ: Leaf
Molecule: Rubisco (Small Subunit) Chain: S Ec: 4.1.1.39		Organism_scientific: Nicotiana Tabacum Organism_common: Common Tobacco Organism_taxid: 4097 Variant: Wisconsin-38 Organ: Leaf
symmetry	Space Group: I 4 2 2	R_factor 0.149 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 149.180 149.180 138.340 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	PO4	enzyme	Lyase E.C.4.1.1.39 BRENDA
related structures	by homologous chain: 1RCX, 1RLD
Gene Ontology	Chain Function Process Component L
Primary reference	The transition between the open and closed states of rubisco is triggered by the inter-phosphate distance of the bound bisphosphate., Duff AP, Andrews TJ, Curmi PM, J Mol Biol 2000 May 19;298(5):903-16. PMID:10801357

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (1ej7.pdb1.gz) 763 Kb LPC: Ligand-Protein Contacts for 1EJ7 CSU: Contacts of Structural Units for 1EJ7 Likely Quarternary Molecular Structure file(s) for 1EJ7 Structure Factors (300 Kb) Retrieve 1EJ7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1EJ7 from S2C, [Save to disk] Re-refined 1ej7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1EJ7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1EJ7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1EJ7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ej7l1, region L:148-474 [Jmol] [rasmolscript] [script source]     - Domain d1ej7l2, region L:18-147 [Jmol] [rasmolscript] [script source]     - Domain d1ej7s_, region S [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ej7_L] [1ej7_S] [1ej7] SWISS-PROT database: [P00876] [P69249] Domain organization of [RBL_TOBAC] [RBS_TOBAC] by SWISSPFAM Domain found in 1EJ7: [RuBisCO_small ] by SMART

Other resources with information on 1EJ7

Community annotation for 1EJ7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---