1EJP Signaling Protein date Mar 03, 2000
title Solution Structure Of The Syndecan-4 Whole Cytoplasmic Domai
authors D.Lee, E.S.Oh, A.Woods, J.R.Couchman, W.Lee
compound source
Molecule: Syndecan-4
Chain: A, B
Fragment: Whole Cytoplasmic Domain
Synonym: Amphiglycan, Ryudocan Core Protein, Synd4
Engineered: Yes
 Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Of This Petide Occurs Naturally In Humans (Homo Sapiens).
methodSolution NMR
note 1EJP is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution structure of the dimeric cytoplasmic domain of syndecan-4., Shin J, Lee W, Lee D, Koo BK, Han I, Lim Y, Woods A, Couchman JR, Oh ES, Biochemistry 2001 Jul 24;40(29):8471-8. PMID:11456484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1ejp.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1EJP
  • Original NMR restraints for 1EJP from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1EJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EJP from S2C, [Save to disk]
    • View 1EJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EJP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EJP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ejpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ejpb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ejp] [1ejp_B] [1ejp_A]
  • SWISS-PROT database: [P31431]
  • Belongs to the peptide translocating syndecan (syndecan) family according to TCDB.
  • Domain organization of [SDC4_HUMAN] by SWISSPFAM
  • Domain found in 1EJP: [4.1m ] by SMART
    • Other resources with information on 1EJP
  • Community annotation for 1EJP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1EJP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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