1EM2 Lipid Binding Protein date Mar 14, 2000
title Star-Related Lipid Transport Domain Of Mln64
authors Y.Tsujishita, J.H.Hurley
compound source
Molecule: Mln64 Protein
Chain: A
Fragment: Star-Related Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 31 2 1
R_factor 0.207 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.417 83.417 81.946 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE, TAR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and lipid transport mechanism of a StAR-related domain., Tsujishita Y, Hurley JH, Nat Struct Biol 2000 May;7(5):408-14. PMID:10802740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1em2.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1EM2
  • CSU: Contacts of Structural Units for 1EM2
  • Likely Quarternary Molecular Structure file(s) for 1EM2
  • Structure Factors (103 Kb)
  • Retrieve 1EM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EM2 from S2C, [Save to disk]
  • Re-refined 1em2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EM2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EM2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1em2a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1em2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1em2] [1em2_A]
  • SWISS-PROT database: [Q14849]
  • Belongs to the putative cholesterol transporter (start1) family according to TCDB.
  • Domain organization of [STAR3_HUMAN] by SWISSPFAM
  • Domain found in 1EM2: [START ] by SMART
  • Other resources with information on 1EM2
  • Community annotation for 1EM2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science