1EM6	Transferase	date	Mar 16, 2000
title	Human Liver Glycogen Phosphorylase A Complexed With Glcnac A 423
authors	V.L.Rath, M.Ammirati, D.E.Danley, J.L.Ekstrom, T.R.Hynes, T.V.Ols D.J.Hoover
compound		source
Molecule: Liver Glycogen Phosphorylase Chain: A, B Ec: 2.4.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Liver Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_plasmid: Pbluebacii
symmetry	Space Group: P 31	R_factor 0.233 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.314 123.314 122.319 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CP4, MPD, NBG, PLP BindingDB	enzyme	Transferase E.C.2.4.1.1 BRENDA
related structures	by homologous chain: 1E1Y, 8GPB
Gene Ontology	Chain Function Process Component A, B
Primary reference	Human liver glycogen phosphorylase inhibitors bind at a new allosteric site., Rath VL, Ammirati M, Danley DE, Ekstrom JL, Gibbs EM, Hynes TR, Mathiowetz AM, McPherson RK, Olson TV, Treadway JL, Hoover DJ, Chem Biol 2000 Sep;7(9):677-82. PMID:10980448

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk] Biological Unit Coordinates (1em6.pdb1.gz) 265 Kb LPC: Ligand-Protein Contacts for 1EM6 CSU: Contacts of Structural Units for 1EM6 Likely Quarternary Molecular Structure file(s) for 1EM6 Retrieve 1EM6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1EM6 from S2C, [Save to disk]

View 1EM6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1EM6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1EM6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1em6a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1em6b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1em6_B] [1em6_A] [1em6] SWISS-PROT database: [P06737] Domain organization of [PYGL_HUMAN] by SWISSPFAM

Other resources with information on 1EM6

Community annotation for 1EM6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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