1EMI	Ribosome	date	Mar 16, 2000
title	Structure Of 16s Rrna In The Region Around Ribosomal Protein
authors	L.Lancaster, G.M.Culver, G.Z.Yusupova, J.H.Cate, M.M.Yuspov, H.F.
compound		source
Molecule: 16s Ribosomal Rna Chain: B Other_details: Coordinates For Thermus Thermophilus 16s Rrn Sequence And Numbering Is That Of E.Coli 16s Rrna;		Organism_scientific: Thermus Thermophilus Organism_taxid: 274
Molecule: Ribosomal Protein S8 Chain: A		Organism_scientific: Thermus Thermophilus Organism_taxid: 274
symmetry	Space Group: I 4 2 2	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 508.000 508.000 803.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	7.50 Å
Gene Ontology	Chain Function Process Component A
Primary reference	The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography., Lancaster L, Culver GM, Yusupova GZ, Cate JH, Yusupov MM, Noller HF, RNA 2000 May;6(5):717-29. PMID:10836793

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk] Biological Unit Coordinates (1emi.pdb1.gz) 7 Kb CSU: Contacts of Structural Units for 1EMI Likely Quarternary Molecular Structure file(s) for 1EMI Retrieve 1EMI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1EMI from S2C, [Save to disk]

View 1EMI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1EMI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1EMI, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1emia_, region A [Jmol] [rasmolscript] [script source]     - Domain d1emib_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1emi_B] [1emi] [1emi_A] SWISS-PROT database: [Q5SHQ2] Domain organization of [RS8_THET8] by SWISSPFAM

Other resources with information on 1EMI

Community annotation for 1EMI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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