1EMO Matrix Protein date Aug 05, 1996
title Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures
authors A.K.Downing, I.D.Campbell, P.A.Handford
compound source
Molecule: Fibrillin
Chain: A
Fragment: Ca2+ Binding Epidermal Growth Factor-Like Domain, Residues 2124 - 2205;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Skin
Tissue: Skin (Dermis)
Cell: Fibroblast
Gene: Fbn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554 (His Tag)
Expression_system_plasmid: Pqe30 (Qiagen)
Expression_system_gene: Fbn1
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1EMN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of a pair of calcium-binding epidermal growth factor-like domains: implications for the Marfan syndrome and other genetic disorders., Downing AK, Knott V, Werner JM, Cardy CM, Campbell ID, Handford PA, Cell 1996 May 17;85(4):597-605. PMID:8653794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1EMO
  • CSU: Contacts of Structural Units for 1EMO
  • Retrieve 1EMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EMO from S2C, [Save to disk]
  • View 1EMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EMO, from MSDmotif at EBI
  • Genome occurence of 1EMO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1emo_1, region 2124-2166 [Jmol] [rasmolscript] [script source]
        - Domain d1emo_2, region 2167-2205 [Jmol] [rasmolscript] [script source]
  • Fold representative 1emo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1emo_A] [1emo]
  • SWISS-PROT database: [P35555]
  • Domain organization of [FBN1_HUMAN] by SWISSPFAM
  • Domain found in 1EMO: [EGF_CA ] by SMART
  • Other resources with information on 1EMO
  • Community annotation for 1EMO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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