1EMT Immune System date Mar 17, 2000
title Fab Antibody Fragment Of An C60 Antifullerene Antibody
authors B.C.Braden, F.A.Goldbaum, B.X.Chen, B.F.Erlanger, A.N.Kirschner S.R.Wilson
compound source
Molecule: Igg Antibody (Light Chain)
Chain: L
Fragment: Fab Fragment
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Igg Antibody (Heavy Chain)
Chain: H
Fragment: Fab Fragment
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.900 65.745 65.562 90.00 112.45 90.00
method X-Ray Diffractionresolution 2.25 Å
related structures by homologous chain: 1DN0, 1MJ7, 1OAR, 1UWX
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceX-ray crystal structure of an anti-Buckminsterfullerene antibody fab fragment: biomolecular recognition of C(60)., Braden BC, Goldbaum FA, Chen BX, Kirschner AN, Wilson SR, Erlanger BF, Proc Natl Acad Sci U S A 2000 Oct 24;97(22):12193-7. PMID:11035793
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1emt.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 1EMT
  • Likely Quarternary Molecular Structure file(s) for 1EMT
  • Retrieve 1EMT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EMT from S2C, [Save to disk]
    • View 1EMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EMT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EMT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1emth1, region H:1-116 [Jmol] [rasmolscript] [script source]
        - Domain d1emth2, region H:117-216 [Jmol] [rasmolscript] [script source]
        - Domain d1emtl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1emtl2, region L:108-214 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1emt] [1emt_L] [1emt_H]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 1EMT: [IG_like] [IGv ] by SMART
    • Other resources with information on 1EMT
  • Community annotation for 1EMT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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