1EMW SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S16 FROM THERMUS THERMOPHILUS date
authors Allard, P., Rak, A.V., Wimberly, B.T., Clemons, W.M., Kalinin, A., Helgstrand, M., Garber, M.B., Ramakrishnan, V., Hard, T.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 47 Modelsresolution
related structures by homologous chain: 1N32
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnother piece of the ribosome: solution structure of S16 and its location in the 30S subunit., Allard P, Rak AV, Wimberly BT, Clemons WM Jr, Kalinin A, Helgstrand M, Garber MB, Ramakrishnan V, Hard T, Structure Fold Des 2000 Aug 15;8(8):875-82. PMID:10997906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1165 Kb) [Save to disk]
  • Biological Unit Coordinates (1emw.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1EMW
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1EMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EMW from S2C, [Save to disk]
  • View 1EMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EMW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1emwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1emw] [1emw_A]
  • SWISS-PROT database: [P80379]
  • Domain organization of [RS16_THETH] by SWISSPFAM
  • Other resources with information on 1EMW
  • Community annotation for 1EMW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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