1EQT Cytokine date Apr 06, 2000
title Met-Rantes
authors D.M.Hoover, J.Shaw, Z.Gryczynski, A.E.I.Proudfoot, T.Wells
compound source
Molecule: T-Cell Specific Rantes Protein
Chain: A, B
Synonym: Small Inducible Cytokine A5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.019 56.809 93.863 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand SO4 enzyme
related structures by homologous chain: 1B3A, 1U4P
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • receptor signaling protein t...
  • CCR1 chemokine receptor bind...
  • chemoattractant activity
  • chemokine receptor antagonis...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1eqt.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1EQT
  • CSU: Contacts of Structural Units for 1EQT
  • Likely Quarternary Molecular Structure file(s) for 1EQT
  • Structure Factors (176 Kb)
  • Retrieve 1EQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EQT from S2C, [Save to disk]
  • Re-refined 1eqt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EQT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EQT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eqta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1eqtb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1eqt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eqt_B] [1eqt] [1eqt_A]
  • SWISS-PROT database: [P13501]
  • Domain organization of [CCL5_HUMAN] by SWISSPFAM
  • Domain found in 1EQT: [SCY ] by SMART
  • Other resources with information on 1EQT
  • Community annotation for 1EQT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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