1ES0 CRYSTAL STRUCTURE OF THE MURINE CLASS II ALLELE I-A(G7) COMPLEXED WITH THE GLUTAMIC ACID DECARBOXYLASE (GAD65) PEPTIDE 207-220 date
authors Corper, A.L., Teyton, L., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
related structures by homologous chain: 1FYT, 1HXY, 1IAO, 1LNU
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceA structural framework for deciphering the link between I-Ag7 and autoimmune diabetes., Corper AL, Stratmann T, Apostolopoulos V, Scott CA, Garcia KC, Kang AS, Wilson IA, Teyton L, Science 2000 Apr 21;288(5465):505-11. PMID:10775108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1es0.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 1ES0
  • Likely Quarternary Molecular Structure file(s) for 1ES0
  • Structure Factors (181 Kb)
  • Retrieve 1ES0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ES0 from S2C, [Save to disk]
  • Re-refined 1es0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ES0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ES0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ES0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1es0a2, region A:1B-82 [Jmol] [rasmolscript] [script source]
        - Domain d1es0a1, region A:83-180 [Jmol] [rasmolscript] [script source]
        - Domain d1es0b2, region B:5-93 [Jmol] [rasmolscript] [script source]
        - Domain d1es0b1, region B:94-189 [Jmol] [rasmolscript] [script source]
  • Fold representative 1es0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1es0_B] [1es0] [1es0_A]
  • SWISS-PROT database: [Q05329] [P04228]
  • Domain organization of [DCE2_HUMAN] [HA2D_MOUSE] by SWISSPFAM
  • Domains found in 1ES0: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
    • Other resources with information on 1ES0
  • Community annotation for 1ES0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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