1ES7 Cytokine date Apr 07, 2000
title Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
authors T.Kirsch, W.Sebald, M.K.Dreyer
compound source
Molecule: Bone Morphogenetic Protein-2
Chain: A, C
Synonym: Bmp-2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rbsiip

Molecule: Bone Morphogenetic Protein Receptor Ia
Chain: B, D
Fragment: Extracellular Domain
Synonym: Alk-3
Ec: 2.7.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 65
R_factor 0.191 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.330 109.330 101.905 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1REW, 3BMP
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structure of the BMP-2-BRIA ectodomain complex., Kirsch T, Sebald W, Dreyer MK, Nat Struct Biol 2000 Jun;7(6):492-6. PMID:10881198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1es7.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 1ES7
  • Likely Quarternary Molecular Structure file(s) for 1ES7
  • Retrieve 1ES7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ES7 from S2C, [Save to disk]
  • View 1ES7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ES7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ES7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1es7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1es7b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1es7c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1es7d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1es7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1es7_C] [1es7] [1es7_D] [1es7_B] [1es7_A]
  • SWISS-PROT database: [P12643] [P36894]
  • Domain organization of [BMP2_HUMAN] [BMR1A_HUMAN] by SWISSPFAM
  • Domain found in 1ES7: [TGFB ] by SMART
  • Alignments of the sequence of 1ES7 with the sequences similar proteins can be viewed for 1ES7's classification [BMP2_HUMAN] [BMR1A_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BMP2_HUMAN] [BMR1A_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1ES7
  • Community annotation for 1ES7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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