1ESM Transferase date Apr 10, 2000
title Structural Basis For The Feedback Regulation Of Escherichia Coli Pantothenate Kinase By Coenzyme A
authors M.Yun, C.G.Park, J.Y.Kim, C.O.Rock, S.Jackowski, H.W.Park
compound source
Molecule: Pantothenate Kinase
Chain: A, B, C, D
Synonym: Pank
Ec: 2.7.1.33
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet21
symmetry Space Group: P 1
R_factor 0.201 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.000 71.240 87.680 102.44 89.48 93.23
method X-Ray Diffractionresolution 2.50 Å
ligand COA, MSE enzyme Transferase E.C.2.7.1.33 BRENDA
related structures by homologous chain: 1ESN, 1GLN
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for the feedback regulation of Escherichia coli pantothenate kinase by coenzyme A., Yun M, Park CG, Kim JY, Rock CO, Jackowski S, Park HW, J Biol Chem 2000 Sep 8;275(36):28093-9. PMID:10862768
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (1esm.pdb1.gz) 108 Kb
  • Biological Unit Coordinates (1esm.pdb2.gz) 108 Kb
  • Biological Unit Coordinates (1esm.pdb3.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 1ESM
  • CSU: Contacts of Structural Units for 1ESM
  • Likely Quarternary Molecular Structure file(s) for 1ESM
  • Structure Factors (361 Kb)
  • Retrieve 1ESM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ESM from S2C, [Save to disk]
  • Re-refined 1esm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ESM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ESM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ESM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1esma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1esmb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1esmc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1esmd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1esm_A] [1esm_D] [1esm] [1esm_C] [1esm_B]
  • SWISS-PROT database: [P0A6I3]
  • Domain organization of [COAA_ECOLI] by SWISSPFAM
  • Other resources with information on 1ESM
  • Community annotation for 1ESM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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