1EVR Hormone Growth Factor date Apr 20, 2000
title The Structure Of The Resorcinolinsulin R6 Hexamer
authors G.D.Smith, E.Ciszak, L.A.Magrum, W.A.Pangborn, R.H.Blessing
compound source
Molecule: Insulin
Chain: A, C, E, G, I, K
Fragment: Residues 87-107
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapiens (Human);

Molecule: Insulin
Chain: B, D, F, H, J, L
Fragment: Residues 25-54
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapiens (Human)
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.350 61.926 47.805 90.00 110.61 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, NA, RCO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L
  • protease binding
  • insulin receptor binding
  • insulin-like growth factor r...
  • hormone activity
  • protein binding
  • MAPK cascade
  • negative regulation of acute...
  • carbohydrate metabolic proce...
  • glucose metabolic process
  • energy reserve metabolic pro...
  • regulation of transcription,...
  • regulation of cellular amino...
  • acute-phase response
  • G-protein coupled receptor s...
  • cell-cell signaling
  • positive regulation of cell ...
  • insulin receptor signaling p...
  • positive regulation of phosp...
  • glucose transport
  • regulation of transmembrane ...
  • positive regulation of cell ...
  • positive regulation of cell ...
  • endocrine pancreas developme...
  • positive regulation of prote...
  • activation of protein kinase...
  • positive regulation of cellu...
  • negative regulation of prote...
  • regulation of protein locali...
  • negative regulation of NAD(P...
  • wound healing
  • negative regulation of prote...
  • glucose homeostasis
  • negative regulation of apopt...
  • positive regulation of MAPK ...
  • cellular protein metabolic p...
  • small molecule metabolic pro...
  • positive regulation of nitri...
  • positive regulation of cell ...
  • negative regulation of gluco...
  • positive regulation of glyco...
  • positive regulation of DNA r...
  • negative regulation of glyco...
  • positive regulation of glyco...
  • positive regulation of mitos...
  • negative regulation of prote...
  • negative regulation of vasod...
  • positive regulation of vasod...
  • negative regulation of fatty...
  • positive regulation of gluco...
  • positive regulation of insul...
  • alpha-beta T cell activation...
  • positive regulation of lipid...
  • regulation of protein secret...
  • negative regulation of prote...
  • positive regulation of cytok...
  • positive regulation of pepti...
  • regulation of insulin secret...
  • negative regulation of lipid...
  • positive regulation of nitri...
  • positive regulation of NF-ka...
  • positive regulation of prote...
  • fatty acid homeostasis
  • negative regulation of respi...
  • positive regulation of respi...
  • positive regulation of pepti...
  • positive regulation of brown...
  • negative regulation of feedi...
  • extracellular region
  • extracellular space
  • endoplasmic reticulum lumen
  • Golgi lumen
  • endosome lumen
  • secretory granule lumen
  • Primary referenceR6 hexameric insulin complexed with m-cresol or resorcinol., Smith GD, Ciszak E, Magrum LA, Pangborn WA, Blessing RH, Acta Crystallogr D Biol Crystallogr 2000 Dec;56 Pt 12:1541-8. PMID:11092919
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1evr.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1EVR
  • CSU: Contacts of Structural Units for 1EVR
  • Likely Quarternary Molecular Structure file(s) for 1EVR
  • Structure Factors (206 Kb)
  • Retrieve 1EVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EVR from S2C, [Save to disk]
  • Re-refined 1evr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1EVR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EVR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1evr.1, region B:,A [Jmol] [rasmolscript] [script source]
        - Domain d1evr.2, region D:,C [Jmol] [rasmolscript] [script source]
        - Domain d1evr.3, region F:,E [Jmol] [rasmolscript] [script source]
        - Domain d1evr.4, region H:,G [Jmol] [rasmolscript] [script source]
        - Domain d1evr.5, region J:,I [Jmol] [rasmolscript] [script source]
        - Domain d1evr.6, region L:,K [Jmol] [rasmolscript] [script source]
  • Fold representative 1evr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1evr_A] [1evr_B] [1evr_C] [1evr_D] [1evr_E] [1evr_F] [1evr_G] [1evr_H] [1evr_I] [1evr_J] [1evr_K] [1evr_L]
  • SWISS-PROT database: [P01308]
  • Domain organization of [INS_HUMAN] by SWISSPFAM
  • Domain found in 1EVR: [IlGF ] by SMART
  • Alignments of the sequence of 1EVR with the sequences similar proteins can be viewed for 1EVR's classification [INS_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [INS_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1EVR
  • Community annotation for 1EVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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