1EVS Cytokine date Apr 20, 2000
title Crystal Structure Of Human Oncostatin M
authors M.C.Deller, K.R.Hudson, S.Ikemizu, J.Bravo, E.Y.Jones, J.K.Heath
compound source
Molecule: Oncostatin M
Chain: A
Engineered: Yes
Other_details: C-Terminal Truncation
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.887 53.285 106.694 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and functional dissection of the cytostatic cytokine oncostatin M., Deller MC, Hudson KR, Ikemizu S, Bravo J, Jones EY, Heath JK, Structure Fold Des 2000 Aug 15;8(8):863-74. PMID:10997905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1evs.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1EVS
  • Likely Quarternary Molecular Structure file(s) for 1EVS
  • Retrieve 1EVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EVS from S2C, [Save to disk]
  • View 1EVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EVS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EVS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1evsa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1evs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1evs] [1evs_A]
  • SWISS-PROT database: [P13725]
  • Domain organization of [ONCM_HUMAN] by SWISSPFAM
  • Domain found in 1EVS: [LIF_OSM ] by SMART
  • Other resources with information on 1EVS
  • Community annotation for 1EVS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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