1EZV STRUCTURE OF THE YEAST CYTOCHROME BC1 COMPLEX CO-CRYSTALLIZED WITH AN ANTIBODY FV-FRAGMENT date
authors Hunte, C., Koepke, J., Lange, C., Rossmanith, T., Michel, H.
compound source
symmetry
R_factor
R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand FES, HEM, SMA, UQ6 enzyme
related structures by homologous chain: 1C08, 1I7Z, 1KB9, 1P84
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquinol-cytochrome-c reduc...


    • B


    C


    D


    E


    F


    G


    H


    I


    X


    Y


    Primary referenceStructure at 2.3 A resolution of the cytochrome bc(1) complex from the yeast Saccharomyces cerevisiae co-crystallized with an antibody Fv fragment., Hunte C, Koepke J, Lange C, Rossmanith T, Michel H, Structure Fold Des 2000 Jun 15;8(6):669-84. PMID:10873857
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (370 Kb) [Save to disk]
  • Biological Unit Coordinates (1ezv.pdb1.gz) 678 Kb
  • LPC: Ligand-Protein Contacts for 1EZV
  • CSU: Contacts of Structural Units for 1EZV
  • Likely Quarternary Molecular Structure file(s) for 1EZV
  • Retrieve 1EZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EZV from S2C, [Save to disk]
    • View 1EZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EZV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EZV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ezva2, region A:240-456 [Jmol] [rasmolscript] [script source]
        - Domain d1ezva1, region A:27-239 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvb1, region B:17-218 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvb2, region B:219-368 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvc3, region C:1-261 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvc2, region C:262-385 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvd2, region D:261-306 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvd1, region D:62-260 [Jmol] [rasmolscript] [script source]
        - Domain d1ezve2, region E:31-86 [Jmol] [rasmolscript] [script source]
        - Domain d1ezve1, region E:87-215 [Jmol] [rasmolscript] [script source]
        - Domain d1ezvf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1ezvg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1ezvh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1ezvi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1ezvx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1ezvy_, region Y [Jmol] [rasmolscript] [script source]
  • Fold representative 1ezv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ezv_E] [1ezv_A] [1ezv_G] [1ezv] [1ezv_B] [1ezv_I] [1ezv_X] [1ezv_C] [1ezv_Y] [1ezv_F] [1ezv_D] [1ezv_H]
  • SWISS-PROT database: [P07143] [P00163] [P18531] [P01647] [P07256] [P07257] [P00127] [P00128] [P08525] [P22289] [P08067]
  • Belongs to the proton-translocating quinol:cytochrome c reductase (qcr) superfamily according to TCDB.
  • Domain organization of [CY1_YEAST] [CYB_YEAST] [HVM60_MOUSE] [KV5AE_MOUSE] [QCR1_YEAST] [QCR2_YEAST] [QCR6_YEAST] [QCR7_YEAST] [QCR8_YEAST] [QCR9_YEAST] [UCRI_YEAST] by SWISSPFAM
  • Domain found in 1EZV: [IGv ] by SMART
    • Other resources with information on 1EZV
  • Community annotation for 1EZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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